deconvatac.pp.reads_to_fragments
================================

.. py:module:: deconvatac.pp.reads_to_fragments


Functions
---------

.. autoapisummary::

   deconvatac.pp.reads_to_fragments.reads_to_fragments


Module Contents
---------------

.. py:function:: reads_to_fragments(adata: anndata.AnnData, read_layer: Optional[str] = None, fragment_layer: str = 'fragments') -> None

   Convert scATAC-seq read counts to appoximate fragment counts.

   Parameters
   ----------
   adata
       AnnData object that contains read counts.
   read_layer
       Key in`.layer` that the read counts are stored in.
   fragment_layer
       Key in`.layer` that the fragment counts will be stored in.

   Returns
   -------
   Adds layer with fragment counts in `.layers[fragment_layer]`.